Edge Collective

UV Spectrophotometry

Designing a DIY UV Spectrophotometer

Quick links

Background

Kearns et al have been working to develop lower-cost methods of testing that leverage a particular feature of biochar (and similar filters): some contaminants adbsorb much more easily than others. It turns out that the presence of one class of more weakly-adsorbed contaminants -- dissolved organic matter -- is relatively easy to assess with a lower-cost laboratory method: UV spectrophotometry.

The details of this approach are laid out in a 2020 article by Kearns et al:

And specific instructions for performing the UV absorbance test are laid out in the supplementary section, here:

Further: while commercial UV spectrophotometers used in such tests are usually over $2000, there are several designs available for DIY forms of the instrument, costing under $100 in parts. We found one design to be particularly simple and well-characterized:

Our aim is to build a working prototype of this UV spectrophotometer, compare its performance to similar commercial instruments used in a laboratory, and then see if such an instrument might be easy to build and use in a community workshop setting.

Misc notes

Sun Mar 3 08:35:31 PM EST 2024

Building the circuit

Precision voltage to current converter

Adafruit 4-pin jumper cable here

Adafruit 4-pin jst ph stemma here

Adafruit JST 4-pin jst ph stemma SMD here

Mon Mar 11 05:20:16 PM EDT 2024

LED polarity

uv detector IN-C35PPCTGU0

datasheet here

custom footprint:

emitter v_0.1 ordered 3/11/24

detector v_0.1 ordered 3/12/24

Fri Mar 15 11:00:43 AM EDT 2024

instructrable on 555 as switch mode supply

Sat Mar 23 03:52:20 PM EDT 2024

Solder mask goof-up on UV emitter part!

Reference for UV emitter IN-C35PPCTGU0

Also: two pins on Q1 on emitter are 'flipped' -- need to fix pins -- was able to solder 'upside-down' anyway to fix

Mon Mar 25 08:17:39 PM EDT 2024

Made a quick 3d enclosure using openscad:

openscad and stl files are here

Fri Mar 29 08:57:08 PM EDT 2024

Water filtering, 1 micron

Selection at McMaster here

Nice pairing on Amazon:

Most recent prototype

Fri Apr 5 08:31:52 PM EDT 2024

Working on detector v_0.2 ...

Sub-schematic that will be moved to a 'control board':

Version 0.1 footprint assignments:

Version 0.1 pinout:

(need to add 2.5V ref)

Fri Apr 5 11:01:04 PM EDT 2024

Detector schematic:

Emitter schematic:

Revision 0.2 of emitter and detector

Sat Apr 6 10:25:06 PM EDT 2024

Edited footprint for LED (remove solder mask from center pad)

Revising mosfet pin assignment on emitter ...

2N7000 datasheet

2N7000 pinout:

emitter ver 0.2

Sat Apr 6 10:22:42 PM EDT 2024

board layout:

schematic:

)

board files:

detector ver 0.2

Sat Apr 6 10:22:55 PM EDT 2024

board layout:

schematic:

)

board files:

Mon Apr 15 08:18:11 PM EDT 2024

Collecting water samples and filtering through 1 um filter ...

3/4" NPT male + 3/4" barb fitting on Amazon

electric water transfer pump on Amazon

calibration of total organic carbon / uv254, EPA document pdf

uva254 go

'request a quote' for uva254 go here

might want to search for 'total organic carbon' (TOC)

An easy spectrophotometric acid-base titration protocol for dissolved organic matter

correlating uv254 to TOC, BOD, and COD video

Great paper on UV254 methods and applications. Note: correlations between uv254 and disinfection byproducts! references here

Mon Apr 29 09:29:59 PM EDT 2024

UV-Vis spec of Organic Compounds

UV-Vis spec, student resources

Nice chapter on uv absorbance

Nice general reference on uv-vis spec

Some UV-Vis chemistry examples

Sun May 5 02:54:23 PM EDT 2024

Notes on testing v0.2

idea: place all non-emitter/detector components on 'bottom' of board to allow easy access during testing

use voltage doubler on emitter board, as per this part here

replace the 5K R15 on detector board with R15 = 619 ohms

add current sense breakout above R2 on emitter board

add 555 boost and 555 emitter input on external feather board

add usb socket to motherboard for power

I was getting a measly 1.0V at the "2V5" reference pin - some buffoon (that is, me) seems to have chosen poorly the value of R15. I have replaced the 5K with a 619 Ohm resistor - and much better! I get 2.5Vreference.

And the signal at "leak" seems to act as I expected, in room light anyway. I still have to set up the LED and test a blank and wet cuvette ...

so, that T-network has a nice high gain!

And the input signal is 2.491 to 2.517 at 1kHz

Implies the equivalent feedback R is about 53.8Meg

There about 26nApp into the the stage with this test

So , 26mVpp into 1Meg for test current, and about 1.4Vpp output

Now to find what I did wrong at the LED stage ...

With 130us rise time that's about 2.7kHz tia bandwidth

Don't run the LED at 10kHz ..

OK I have a solid 0.5Vpp signal at "leak" node when I ping the LED board with 0V to 3V square wave at 500 Hz. On that emitter pcb I had to swap out R1 (was 49.9K) to 49.9 Ohms, and R2 (was 24.9K) to 24.9 Ohms. So, no cuvette, in the opto-mechanical system Craig designed, I see 0.5Vpp signal. Not bad.

less nice, I see some noise - I think that high gain TIA is also picking up 60Hz, and some other crap. more scope-ing to figure this out .... maybe we want a metal box ?

Fri May 10 03:39:30 PM EDT 2024

Fri May 17 08:25:56 PM EDT 2024

Version 0.2 of hardware does indeed work!

Input: 1 kHz square wave, 50% duty cycle, 3.3V pp
Video of initial test with cuvette filled with distilled water. Interesting: voltage at DETECT slightly higher with liquid-filled cuvette than without any cuvette ... lens effect?
Raw battery sag is about 0.2V
Test setup
LEAK blocked
LEAK unblocked
RECT blocked
RECT unblocked
DETECT blocked
DETECT unblocked

Initial 'linearity test' attempt using tannin powder
Video of initial tannin test. Initial solution: 25 mg tannin powder in 5 mL of distilled water (this dropped DETECT signal to 'zero'); then diluted 5 mL of that solution into 25 mL of distilled water.

Next steps:

Sun May 19 06:02:51 PM EDT 2024

Similar platform: https://iorodeo.com/products/uv-open-colorimeter

What would be required to make their system work for UV254?

Sun May 26 01:51:00 PM EDT 2024

555-based boost circuit design

Reference is circuit 1 from this tutorial

Power mosfet IRF2907Z datasheet here

op-amp is LT1716

Sat Jun 15 03:28:33 PM EDT 2024

generating a 500 hz signal on a feather m4 ...

start with silly blink example

.002 second delay ...

Tue Jun 18 05:51:13 PM EDT 2024

Great description of method for UV254 here: https://images.hach.com/asset-get.download.jsa?code=50588

"use a glass fiber filter with no organic binder"

As well as here: https://assets.thermofisher.com/TFS-Assets/LPD/Application-Notes/an_uva_e_1020_rev_b_rev_web.pdf

Kearns et al methods suggest 1 um filter; Looks from last link there that .45 um filters are also acceptable

Getting some good results here -- https://www.amazon.com/s?k=glass+fiber+syringe+filter&i=industrial&crid=3FR5VDYJW4RHQ&sprefix=glass+fiber+syringe+filter%2Cindustrial%2C105&ref=nb_sb_noss_1

... need to figure out what diameter filter to try

Fri Jun 28 02:33:07 PM EDT 2024

Another 555 boost circuit here

https://www.eevblog.com/forum/projects/555-timer-boost-converter-(and-buck-converter)-switching-power-regulator/

And yet another here: https://www.instructables.com/Simple-DC-DC-Boost-Converter-Using-555/

https://www.researchgate.net/publication/359257240_DC_to_DC_Boost_Converter_using_555_Timer_IC

From https://www.researchgate.net/figure/DC-to-DC-Boost-Converter-using-555-timer-IC-6-to-24_fig1_359257240 --

via https://www.youtube.com/watch?v=fuXH-cQjYwo

also: https://how2electronics.com/dc-dc-converter-using-555-timer/

simplest: https://www.circuits-diy.com/boost-converter-circuit-using-555-timer-ic/

555 oscillator circuit explained here: https://www.electronics-tutorials.ws/waveforms/555_oscillator.html

simplest 555 oscillator circuit https://www.555-timer-circuits.com/simplest-555-oscillator.html

good explanation of desgining a 555 oscillator: https://www.digikey.com/en/resources/conversion-calculators/conversion-calculator-555-timer#:~:text=mS,Niobium%20Oxide%20Capacitors

BCN547 reference https://components101.com/transistors/bc547-transistor-pinout-datasheet

Sun Jun 30 05:40:21 PM EDT 2024

Used this circuit to make a mostly 50% duty cycle oscillator: https://www.electronics-tutorials.ws/waveforms/555-circuits-part-1.html -- using the 'Simple 555 Oscillator' ... could improve by using diodes in lower circuits on that page ('exact 50% duty cycle'), but waiting on diode supply. used R=5.5K, C=.1uF ... freq should be 1.3KHz, got more like 580 Hz.

Now going to try to build this: https://www.researchgate.net/profile/Muhammad-Ameer-Hamza-2/publication/359257240/figure/fig1/AS:1134177667817474@1647420436729/DC-to-DC-Boost-Converter-using-555-timer-IC-6-to-24.ppm

... or this: https://how2electronics.com/dc-dc-converter-using-555-timer/https://how2electronics.com/dc-dc-converter-using-555-timer/

Review of 555 timer https://electronics.stackexchange.com/questions/152432/555-timer-boost-converter-doesnt-meet-spec

Flyback converter for dummies https://www.dos4ever.com/flyback/flyback.html -- great explanation

Nice notes on 555 boost converters https://github.com/tardate/LittleArduinoProjects/blob/master/Electronics101/555Timer/NixiePowerSupply/README.md

This instructable might be derivative https://www.instructables.com/High-Voltage-Power-Supply-for-Nixie-and-Valve-Tube/ -- with a better circuit to follow

Very clear circuit diagrams:

this seems like a very similar circuit https://www.eleccircuit.com/wp-content/uploads/2012/08/dc-to-dc-converter-using-ic-ne555.jpg

problem -- if use single 555, the output voltage will drop as the battery voltage drops. using another 555 can compensate. https://www.eevblog.com/forum/beginners/boost-converter-using-555/

... unless, i think, there's some feedback mechanism -- which an op-amp, or another 555, can provide.

Mon Jul 1 05:23:37 PM EDT 2024

Might try the IRF740 as a power mosfet ... https://www.vishay.com/docs/91054/91054.pdf

why / why not use an op-amp as a comparator? nice app note: https://www.analog.com/media/en/technical-documentation/application-notes/an-849.pdf

second circuit uses the BC557 PNP transistor https://www.mouser.com/datasheet/2/308/BC556BTA_D-2310029.pdf

trying the first circuit

using the tlv2462 as a comparator, datasheet here

Post debug with Mike:

Tue Jul 2 05:26:31 PM EDT 2024

LM358ADR digikey $0.40 here

Package: 8-SOIC (0.154", 3.90mm Width)

What input voltage is ideal for the LEDs?

Try to get to 7.5 volts ...

Okay ...

Got to 7.5 volts with the combination I have

Replicated the basic setup with 555 timer input, using this circuit as a reference:

Reference: see "555 Circuits Part 1 – An Improved Duty Cycle" , at https://www.electronics-tutorials.ws/waveforms/555-circuits-part-1.html

Used: NE555 timer, RA = RB = 5.5K; C = 0.1 uF; got freq of 1.15 kHz; used 100 nF from pin 5 to ground

555 output was a little noisy / shaky, not sure whether that's important / something to address.

1.15 kHz seemed to result in stronger detector signal than 660 Hz, from what I could tell ...

Meanwhile, the circuit I'm using to generate 7.5 volts is the first circuit here

seemed to generate around 7.5 volts. Might want to place an optional potentiometer to dial in the proper voltage ...

Wed Jul 3 05:27:24 PM EDT 2024

Reading about output filter design here: https://resources.altium.com/p/switching-power-supply-output-filter-design-and-simulation

Added 10uF cap from 5V to GND, and added 50 uH inductor across 5V output ...

Switching 555 is running at 155 KHz

Current signal gen 555 output is at 880 Hz

Designing a snubber circuit for a buck IC: https://fscdn.rohm.com/en/products/databook/applinote/ic/power/switching_regulator/buck_snubber_app-e.pdf

Minimizing ringing of a boost converter: https://www.ti.com/lit/an/slva255/slva255.pdf?ts=1720022648821

Pi filter: https://diyguru.org/term/what-is-a-pi-filter/

via LM555 datasheet

SOIC-8 -- 4.90 mm × 3.91 mm

RC snubber around a Mosfet

Fri Jul 5 06:07:37 PM EDT 2024

What to do with unused op-amps https://e2e.ti.com/blogs_/archives/b/thesignal/posts/the-unused-op-amp-what-to-do

Selecting the right comparator https://www.analog.com/en/resources/technical-articles/selecting-the-right-comparator.html

Reference around designing snubber circuits https://www.cde.com/resources/technical-papers/design.pdf

TL331IDBVR -- the single comparator version of the lm339 -- https://www.digikey.com/en/products/detail/texas-instruments/TL331IDBVR/381307

LMV331 also a possibility https://www.ti.com/lit/ds/symlink/lmv331-n.pdf?HQS=dis-dk-null-digikeymode-dsf-pf-null-wwe&ts=1720219930696&ref_url=https%253A%252F%252Fwww.ti.com%252Fgeneral%252Fdocs%252Fsuppproductinfo.tsp%253FdistId%253D10%2526gotoUrl%253Dhttps%253A%252F%252Fwww.ti.com%252Flit%252Fgpn%252Flmv331-n

Suggested power mosfet here: https://www.digikey.com/en/products/detail/diodes-incorporated/DMN61D9UWQ-13/7666847

-- to be determined, as long as there's a proper footprint

going for this for now https://www.diodes.com/assets/Datasheets/DMN2056U.pdf -- final is the DMN2056U

QT-PY details https://learn.adafruit.com/adafruit-qt-py/downloads

test point https://www.digikey.com/en/products/detail/keystone-electronics/5001/255327

Thu Jul 11 04:35:04 PM EDT 2024

Previous linearity evaluation

Previous linearity test, using multimeter to measure outout of 'DETECT', and wine tannins:

Addressing fluctuating ADC measurement

Fixing the fluctuating signal on the ADC Feather input by adding an RC filter (R=5.5K, C=330nF, placed right at ADC input)
0.1uF or 1uF cap only
RC filter (R=5.5K, C=330nF) on breadboard; 4 inch wire then connects to Feather ADC.
RC filter (R=5.5K, C=330nF) with cap placed directly at Feather ADC

Summary: fluctuating ADC measurements seem to have been due to boost generator pulses being picked up by ADC. Adding RC filter squashed it, made ADC much more stable. Further improvements might involve measuring just after the 555 pulses, to avoid any influence of 555 signal.

Fri Jul 12 08:05:59 PM EDT 2024

added measurement 'solid' to Craig's openscad model:

//PCB_PCB = COLUMN_DEPTH-(PCB_STAND_OFF_DEPTH); PCB_PCB = COLUMN_DEPTH - PCB_THICKNESS*2; translate([-COLUMN_WIDTH/2,-PCB_PCB/2,0]) color("blue",0.6) cube([COLUMN_WIDTH,PCB_PCB,COLUMN_HEIGHT]);

echo(PCB_PCB=PCB_PCB);

where PCB_PCB is the distance between the inner surfaces of the emitter and detector PCBs

seems to work well

and the measured distance is 23.9 mm

so in the control board design, use this distance, plus any offset due to right angle headers

Sat Jul 13 07:34:03 PM EDT 2024

Right angle header dimensions; datasheet

Female header: datasheet

Sun Jul 14 07:48:14 PM EDT 2024

Right angle female header:

Detector pinout:

Emitter pinout:

COLUMN_WIDTH=44 mm

i.e. the emitter and detector pcbs are 34 mm x 34 mm; the current 'column' 3d design is 10 mm wider than the pcb

if we want the connectors to be separated by an integral number typical header spacings, we can do 12; i.e. 12*2.54 mm = 30.48

detector header is at 29.62;

Tue Jul 16 07:12:13 PM EDT 2024

Partitioning and layout of mixed-signal PCBs here

Ground pours in KiCad here

D1 -- Zener diode -- Need to use 3V zener ; for example, MMSZ4683-TP -- SOD123 seems like typical footprint?

D4 -- Schottky diode, e.g. SM5817PL-TP ... SOD123FL

555 timer -- e.g. NE555DR -- 8-SOIC

inductor 50uH -- e.g. SRR1205-500YL

Proposed division of signals on board:

Better version:

REMINDER: need to add RC low-pass filter on top of analog input in 'motherboard'

Fri Jul 19 06:44:38 PM EDT 2024

Switch on/off drawing here

Mon Jul 22 09:53:46 PM EDT 2024

Tue Oct 8 07:01:59 PM EDT 2024

optical_column_pcb_3.scad: